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Fine Mapping Genes Through QTL AnalysisKarl Skare, Jane Kenney-Hunt, Gloria Fawcett, Jim Cheverud, Department of Anatomy and Neurobiology, Washington University Body size has long been considered a paradigm for quantitative inheritance due to its role in morphology, relative ease of measurement, and its genetic characteristics. Body size is a quantitative trait which is affected by several genes of relatively small effect. In order to identify where these genes are located within the genome, two strains of mice from Jackson Lab were crossed to produce an F1 generation; the strain selected for large body size (LG/J) has an average mass of 37.4 g at 60 days of age and the strain selected for small body size (SM/J) has an average mass of 13.6 g at 60 days of age, making the difference in mass between the strains approximately 24 g. The F1 mice were crossed to produce F2 mice, which were then randomly mated in a large population during each successive generation. The necropsy traits for which quantitative trait loci (QTLs) are identified include: the masses of the heart, kidneys, liver, spleen, and fat pad, the total body weight, and the tail length. After necropsy, DNA is extracted from the liver, a PCR is performed, and the PCR product is run on a 5% agarose gel. The PCR product is used to determine the genotype of each mouse at each marker. Due to recombination, there are differences in genotype between mice at different markers. Between the markers, interval mapping is used to calculate what the most likely genotype is at each point along the chromosome. If mice that have different genotypes in certain regions also show different phenotypes of the various necropsy traits, then we interpret this as evidence that there is a gene in that region affecting that trait. Data collected on the F2 mice allowed regions on the scale of 200 genes to be identified, but now that recombination has broken this region into smaller fragments, fine-mapping can be accomplished by adding more markers in the F10 generation. The addition of new markers means that the distance between the markers is smaller and the region of interest can be reduced from 200 genes to ~20 genes. Two markers, D1Mit380 and D1Mit212, were added to a 30-centimorgan region on chromosome 1 in order to identify any emergent QTL in that region. Once we get the results of our QTL analysis, a genome database can be used to identify candidate genes within this region of interest. This data has the potential to identify the genes of small effect that are important to the evolution of body size. The importance of body size in physiological and morphological features indicates that genes related to body size will also have pleiotropic effects on many other biologically important characters.
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